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1

Computer simulations: tools for population and evolutionary genetics

Hoban, Sean, Bertorelle, Giorgio, Gaggiotti, Oscar E.

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 865 KB

english, 2012

2

Post-2020 goals overlook genetic diversity

Sills, Jennifer, Laikre, Linda, Hoban, Sean, Bruford, Michael W., Segelbacher, Gernot, Allendorf, Fred W., Gajardo, Gonzalo, RodrÃguez, Antonio GonzÃ¡lez, Hedrick, Philip W., Heuertz, Myriam, Hohenlo

Journal:

Year:

2020

File:

PDF, 1.45 MB

2020

3

High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: a simulation study

Sean M Hoban,Massimo Mezzavilla,Oscar E Gaggiotti,Andrea Benazzo…

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 313 KB

english, 2013

4

skeleSim: an extensible, general framework for population genetic simulation in R

Parobek, Christian M., Archer, Frederick I., DePrenger-Levin, Michelle E., Hoban, Sean M., Liggins, Libby, Strand, Allan E.

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 360 KB

english, 2016

5

Optimizing Conservation Strategies for a Threatened Tree Species: In Situ Conservation of White Ash (Fraxinus americana L.) Genetic Diversity through Insecticide Treatment

Flower, Charles, Fant, Jeremie, Hoban, Sean, Knight, Kathleen, Steger, Laura, Aubihl, Elijah, Gonzalez-Meler, Miquel, Forry, Stephen, Hille, Andrea, Royo, Alejandro

Journal:

Year:

2018

Language:

english

File:

PDF, 3.74 MB

english, 2018

6

Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved

Hoban, Sean, Bruford, Michael, D'Urban Jackson, Josephine, Lopes-Fernandes, Margarida, Heuertz, Myriam, Hohenlohe, Paul A., Paz-Vinas, Ivan, SjÃ¶gren-Gulve, Per, Segelbacher, Gernot, Vernesi, Cristian

Journal:

Biological Conservation

Year:

2020

File:

PDF, 1.28 MB

2020

7

Range-wide distribution of genetic diversity in the North American tree Juglans cinerea: a product of range shifts, not ecological marginality or recent population decline

SEAN M. HOBAN, DANIEL S. BORKOWSKI, SUNSHINE L. BROSI, TIM S. McCLEARY, LAURA M. THOMPSON, JASON S. McLACHLAN, MARIE A. PEREIRA, SCOTT E. SCHLARBAUM, JEANNE ROMERO-SEVERSON

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 470 KB

english, 2010

8

Thirteen nuclear microsatellite loci for butternut (Juglans cinerea L.)

SEAN HOBAN, ROBERT ANDERSON, TIM MCCLEARY, SCOTT SCHLARBAUM, JEANNE ROMERO-SEVERSON

Journal:

Molecular Ecology Resources

Year:

2008

Language:

english

File:

PDF, 89 KB

english, 2008

9

Human-impacted landscapes facilitate hybridization between a native and an introduced tree

Sean M. Hoban, Tim S. McCleary, Scott E. Schlarbaum, Sandra L. Anagnostakis, Jeanne Romero-Severson

Journal:

Evolutionary Applications

Year:

2012

Language:

english

File:

PDF, 453 KB

english, 2012

10

A rare case of natural regeneration in butternut, a threatened forest tree, is parent and space limited

Sean M. Hoban, Scott E. Schlarbaum, Sunshine L. Brosi, Jeanne Romero-Severson

Journal:

Conservation Genetics

Year:

2012

Language:

english

File:

PDF, 407 KB

english, 2012

11

Homonymy, synonymy and hybrid misassignments in butternut (Juglans cinerea) and Japanese walnut (Juglans ailantifolia) nut cultivars

Hoban, Sean, Romero-Severson, Jeanne

Journal:

Genetic Resources and Crop Evolution

Year:

2012

Language:

english

File:

PDF, 323 KB

english, 2012

12

Bringing genetic diversity to the forefront of conservation policy and management

Hoban, Sean M., Hauffe, Heidi C., PÃ©rez-Espona, SÃlvia, Arntzen, Jan W., Bertorelle, Giorgio, Bryja, Josef, Frith, Katie, Gaggiotti, Oscar E., Galbusera, Peter, Godoy, JosÃ© A., Hoelzel, A. Rus, Nic

Journal:

Conservation Genetics Resources

Year:

2013

Language:

english

File:

PDF, 160 KB

english, 2013

13

Sample Planning Optimization Tool for conservation and population Genetics (SPOTG): a software for choosing the appropriate number of markers and samples

Hoban, Sean, Gaggiotti, Oscar, Bertorelle, Giorgio, O'Hara, Robert B.

Journal:

Methods in Ecology and Evolution

Year:

2013

Language:

english

File:

PDF, 1.49 MB

english, 2013

14

The number of markers and samples needed for detecting bottlenecks under realistic scenarios, with and without recovery: a simulation-based study

Hoban, Sean M., Gaggiotti, Oscar E., Bertorelle, Giorgio

Journal:

Molecular Ecology

Year:

2013

Language:

english

File:

PDF, 185 KB

english, 2013

15

Conservation Genetic Resources for Effective Species Survival (ConGRESS): Bridging the divide between conservation research and practice

Hoban, Sean, Arntzen, Jan W., Bertorelle, Giorgio, Bryja, Josef, Fernandes, Margarida, Frith, Katie, Gaggiotti, Oscar, Galbusera, Peter, Godoy, José A., Hauffe, Heidi C., Rus Hoelzel, A., Nichols, Ric

Journal:

Journal for Nature Conservation

Year:

2013

Language:

english

File:

PDF, 469 KB

english, 2013

16

An overview of the utility of population simulation software in molecular ecology

Journal:

Molecular Ecology

Year:

2014

Language:

english

File:

PDF, 3.83 MB

english, 2014

17

Spatial genetic structure in 21 populations of butternut, a temperate forest tree (Juglans cinerea L.), is correlated to spatial arrangement, habitat, and land-use history

Hoban, Sean M., McCleary, Tim S., Schlarbaum, Scott E., Romero-Severson, Jeanne

Journal:

Forest Ecology and Management

Year:

2014

Language:

english

File:

PDF, 440 KB

english, 2014

18

Optimal sampling of seeds from plant populations for ex-situ conservation of genetic biodiversity, considering realistic population structure

Hoban, Sean, Schlarbaum, Scott

Journal:

Biological Conservation

Year:

2014

Language:

english

File:

PDF, 520 KB

english, 2014

19

Developing quantitative seed sampling protocols using simulations: A reply to comments from Guja et al. and Guerrant et al.

Hoban, Sean, Strand, Allan, Fraga, Naomi, Richards, Chris, Schlarbaum, Scott

Journal:

Biological Conservation

Year:

2015

Language:

english

File:

PDF, 201 KB

english, 2015

20

Chloroplast haplotypes suggest preglacial differentiation and separate postglacial migration paths for the threatened North American forest treeJuglans cinereaL.

Laricchia, Kristen M., McCleary, Tim S., Hoban, Sean M., Borkowski, Daniel, Romero-Severson, Jeanne

Journal:

Tree Genetics & Genomes

Year:

2015

Language:

english

File:

PDF, 633 KB

english, 2015

21

Loci under selection during multiple range expansions of an invasive plant are mostly population specific, but patterns are associated with climate

Zenni, Rafael D., Hoban, Sean M.

Journal:

Molecular Ecology

Year:

2015

Language:

english

File:

PDF, 233 KB

english, 2015

22

Comparative evaluation of potential indicators and temporal sampling protocols for monitoring genetic erosion

Hoban, Sean, Arntzen, Jan A., Bruford, Michael W., Godoy, José A., Rus Hoelzel, A., Segelbacher, Gernot, Vilà, Carles, Bertorelle, Giorgio

Journal:

Evolutionary Applications

Year:

2014

Language:

english

File:

PDF, 567 KB

english, 2014

23

Challenging a "Why Should I Care" Attitude by Incorporating Societal Issues in the Classroom

Hoban, Sean, Romero-Severson, Jeanne

Journal:

The American Biology Teacher

Year:

2011

Language:

english

File:

PDF, 393 KB

english, 2011

24

Ex situ seed collections will benefit from considering spatial sampling design and species’ reproductive biology

Hoban, Sean, Strand, Allan

Journal:

Biological Conservation

Year:

2015

Language:

english

File:

PDF, 1.22 MB

english, 2015

25

Ancient, but not recent, population declines have had a genetic impact on alpine yellow-bellied toad populations, suggesting potential for complete recovery

Cornetti, Luca, Benazzo, Andrea, Hoban, Sean, Vernesi, Cristiano, Bertorelle, Giorgio

Journal:

Conservation Genetics

Year:

2016

Language:

english

File:

PDF, 2.42 MB

english, 2016

26

The importance of effective sampling for exploring the population dynamics of haploid-diploid seaweeds

Krueger-Hadfield, Stacy A., Hoban, Sean M., Amsler, C.

Journal:

Journal of Phycology

Year:

2016

Language:

english

File:

PDF, 453 KB

english, 2016

27

Ecology, environment and evolutionary history influence genetic structure in five mammal species from the Italian Alps

Vernesi, Cristiano, Hoban, Sean M., Pecchioli, Elena, Crestanello, Barbara, Bertorelle, Giorgio, Rosà, Roberto, Hauffe, Heidi C.

Journal:

Biological Journal of the Linnean Society

Year:

2016

Language:

english

File:

PDF, 768 KB

english, 2016

28

Accounting for the nested nature of genetic variation across levels of organization improves our understanding of biodiversity and community ecology

Read, Quentin D., Hoban, Sean M., Eppinga, Maarten B., Schweitzer, Jennifer A., Bailey, Joseph K.

Journal:

Year:

2016

Language:

english

File:

PDF, 925 KB

english, 2016

29

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

Hoban, Sean, Kelley, Joanna L., Lotterhos, Katie E., Antolin, Michael F., Bradburd, Gideon, Lowry, David B., Poss, Mary L., Reed, Laura K., Storfer, Andrew, Whitlock, Michael C., Baer, Charles F., Win

Journal:

American Naturalist

Year:

2016

Language:

english

File:

PDF, 7.95 MB

english, 2016

30

Breaking RAD: An evaluation of the utility of restriction site associated DNA sequencing for genome scans of adaptation

Lowry, David B., Hoban, Sean, Kelley, Joanna L., Lotterhos, Katie E., Reed, Laura K., Antolin, Michael F., Storfer, Andrew

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 1.15 MB

english, 2016

31

Quantitative evaluation of hybridization and the impact on biodiversity conservation

van Wyk, Anna M., Dalton, Desiré L., Hoban, Sean, Bruford, Michael W., Russo, Isa-Rita M., Birss, Coral, Grobler, Paul, van Vuuren, Bettine Janse, Kotzé, Antoinette

Journal:

Ecology and Evolution

Year:

2017

Language:

english

File:

PDF, 809 KB

english, 2017

32

Responsible RAD: Striving for best practices in population genomic studies of adaptation

Lowry, David B., Hoban, Sean, Kelley, Joanna L., Lotterhos, Katie E., Reed, Laura K., Antolin, Michael F., Storfer, Andrew

Journal:

Molecular Ecology Resources

Year:

2017

Language:

english

File:

PDF, 133 KB

english, 2017

33

Rangewide population differentiation and population substructure inQuercus rubraL.

Borkowski, Daniel S., Hoban, Sean M., Chatwin, Warren, Romero-Severson, Jeanne

Journal:

Tree Genetics & Genomes

Year:

2017

Language:

english

File:

PDF, 1.42 MB

english, 2017

34

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

Flanagan, Sarah P., Forester, Brenna R., Latch, Emily K., Aitken, Sally N., Hoban, Sean

Journal:

Evolutionary Applications

Year:

2017

Language:

english

File:

PDF, 1.00 MB

english, 2017

35

Differentiation measures for conservation genetics

Jost, Lou, Archer, Frederick, Flanagan, Sarah, Gaggiotti, Oscar, Hoban, Sean, Latch, Emily

Journal:

Evolutionary Applications

Year:

2018

Language:

english

File:

PDF, 1.17 MB

english, 2018

36

‘Intentional Genetic Manipulation’ as a conservation threat

Russo, Isa-Rita M., Hoban, Sean, Bloomer, Paulette, Kotzé, Antoinette, Segelbacher, Gernot, Rushworth, Ian, Birss, Coral, Bruford, Michael W.

Journal:

Conservation Genetics Resources

Year:

2018

Language:

english

File:

PDF, 1.29 MB

english, 2018

37

A Non-Genotoxic Antibody Drug Conjugate Targeting C-Kit for Hematopoietic Stem Cell Transplant Conditioning

Hartigan, Adam J., Pearse, Brad R., McDonough, Sean M., Proctor, Jennifer L., Adams, Hillary L., McShea, Molly A., Hoban, Megan D., Panwar, Rajiv, Hyzy, Sharon L., Goncalves, Kevin A., Palchaudhuri, R

Journal:

Biology of Blood and Marrow Transplantation

Year:

2018

Language:

english

File:

PDF, 487 KB

english, 2018

38

Integrative conservation genetics: Prioritizing populations using climate predictions, adaptive potential and habitat connectivity

Journal:

Molecular Ecology Resources

Year:

2018

Language:

english

File:

PDF, 200 KB

english, 2018

39

Next Generation Conservation Genetics and Biodiversity Monitoring

Hunter, Margaret E., Hoban, Sean, Bruford, Michael W., Segelbacher, Gernot, Bernatchez, Louis

Journal:

Evolutionary Applications

Year:

2018

Language:

english

File:

PDF, 665 KB

english, 2018

40

Implementing a new approach to effective conservation of genetic diversity, with ash ( Fraxinus excelsior ) in the UK as a case study

Hoban, Sean, Kallow, Simon, Trivedi, Clare

Journal:

Biological Conservation

Year:

2018

Language:

english

File:

PDF, 2.45 MB

english, 2018

41

Species Radiations in the Sea: What the Flock?

Bowen, Brian W, Forsman, Zac H, Whitney, Jonathan L, Faucci, Anuschka, Hoban, Mykle, Canfield, Sean J, Johnston, Erika C, Coleman, Richard C, Copus, Joshua M, Vicente, Jan, Toonen, Robert J, Gillespie

Journal:

Journal of Heredity

Year:

2020

Language:

english

File:

PDF, 302 KB

english, 2020

42

Taxonomic similarity does not predict necessary sample size for ex situ conservation: a comparison among five genera

Hoban, Sean, Callicrate, Taylor, Clark, John, Deans, Susan, Dosmann, Michael, Fant, Jeremie, Gailing, Oliver, Havens, Kayri, Hipp, Andrew L., Kadav, Priyanka, Kramer, Andrea T., Lobdell, Matthew, Mage

Journal:

Proceedings Biological Sciences

Year:

2020

File:

PDF, 609 KB

2020

43

IUCN Red List and the value of integrating genetics

Garner, Brittany A., Hoban, Sean, Luikart, Gordon

Journal:

Conservation Genetics

Year:

2020

File:

PDF, 686 KB

2020

44

1.4 Automatisierung

Journal:

Year:

2020

File:

PDF, 457 KB

2020

45

Hybrid Breeding for Restoration of Threatened Forest Trees: Evidence for Incorporating Disease Tolerance in Juglans cinerea

Brennan, Andrea N., McKenna, James R., Hoban, Sean M., Jacobs, Douglass F.

Journal:

Frontiers in Plant Science

Year:

2020

File:

PDF, 1.23 MB

2020